API docs

API Contents:

• konnektor.network_planner
  • konnektor.network_planners.generators
    • MaximalNetworkGenerator
      • MaximalNetworkGenerator.generate_ligand_network()
    • HeuristicMaximalNetworkGenerator
      • HeuristicMaximalNetworkGenerator.generate_ligand_network()
    • ExplicitNetworkGenerator
      • ExplicitNetworkGenerator.generate_ligand_network()
      • ExplicitNetworkGenerator.generate_network_from_indices()
      • ExplicitNetworkGenerator.generate_network_from_names()
    • RadialNetworkGenerator
    • StarNetworkGenerator
      • StarNetworkGenerator.generate_ligand_network()
    • MinimalSpanningTreeNetworkGenerator
      • MinimalSpanningTreeNetworkGenerator.generate_ligand_network()
    • CyclicNetworkGenerator
      • CyclicNetworkGenerator.generate_ligand_network()
    • ClusteredNetworkGenerator
      • ClusteredNetworkGenerator.generate_ligand_network()
    • StarrySkyNetworkGenerator
  • konnektor.network_planners.concatenators
    • MstConcatenator
      • MstConcatenator.concatenate_networks()
• konnektor.network_tools
  • konnektor.network_tools.clustering
    • ChargeClusterer
      • ChargeClusterer.cluster_compounds()
    • ScaffoldClusterer
      • ScaffoldClusterer.cid_components
      • ScaffoldClusterer.cid_scaffold
      • ScaffoldClusterer.cluster_compounds()
      • ScaffoldClusterer.find_solution()
      • ScaffoldClusterer.formulate_answer()
      • ScaffoldClusterer.generate_scaffold_network()
      • ScaffoldClusterer.match_scaffolds_to_source()
      • ScaffoldClusterer.normalise_molecules()
      • ScaffoldClusterer.scaffold_looseness
    • ComponentsDiversityClusterer
      • ComponentsDiversityClusterer.cluster_centers
      • ComponentsDiversityClusterer.cluster_compounds()
  • konnektor.network_tools.network_handling
    • merge_networks()
    • merge_two_networks()
    • append_component()
    • concatenate_networks()
    • delete_component()
    • delete_transformation()
• konnektor.network_analysis
  • get_component_connectivities()
  • get_component_number_cycles()
  • get_component_scores()
  • get_is_connected()
  • get_network_cost()
  • get_network_efficiency()
  • get_network_score()
  • get_number_of_network_cycles()
  • get_transformation_failure_robustness()
• konnektor.visualization
  • konnektor.network_visualiztion.visualization
    • draw_ligand_network()
    • get_node_connectivities()
  • konnektor.network_visualiztion.widget
    • draw_network_widget()
    • get_node_connectivities()
    • map2svg()
    • mol2svg()
• konnektor.utils
  • build_n_random_mst_network()
  • build_random_dataset()
  • build_random_fully_connected_network()
  • build_random_mst_network()
  • genMapper
    • genMapper.suggest_mappings()
  • genScorer
    • genScorer.get_score()
• konnektor.data
  • get_benzene_ligands()
  • get_charged_ligands()
  • get_hif2a_ligands()